py_hla_match.config

class py_hla_match.config.HLAMatchConfig(ard_imgt_version: 'str' = 'Latest', ard_data_dir: 'Optional[str]' = None, extra_valid_loci: 'FrozenSet[str]' = <factory>, strict_loci: 'bool' = True, na_tokens: 'FrozenSet[str]' = <factory>, expression_suffix_policy: 'ExpressionSuffixPolicy' = <factory>)[source]

Bases: object

Parameters:

ard_imgt_version (str)
ard_data_dir (str | None)
extra_valid_loci (FrozenSet[str])
strict_loci (bool)
na_tokens (FrozenSet[str])
expression_suffix_policy (ExpressionSuffixPolicy)

ard_data_dir: str | None = None

ard_imgt_version: str = 'Latest'

property drb345_sub_loci: FrozenSet[str]

canonical DRB345 sub-loci (DRB3/DRB4/DRB5/DRBX). Exposed via config for future adjustability without changing hla parser logic.

Type:: Placeholder

property effective_valid_loci: FrozenSet[str]

expression_suffix_policy: ExpressionSuffixPolicy

extra_valid_loci: FrozenSet[str]

na_tokens: FrozenSet[str]

property nomenclature_pattern: Pattern[str]

recompile_patterns()[source]

Return type:: None

strict_loci: bool = True

py_hla_match.config.config_context(config)[source]

Context manager to temporarily override (thread-)local config. The previous (potentially default) config is restored on exit or exception.

Parameters:: config (HLAMatchConfig)

py_hla_match.config.get_config()[source]

Return type:: HLAMatchConfig

py_hla_match.config.get_config_version()[source]

Return type:: int

py_hla_match.config.set_config(config)[source]

Parameters:: config (HLAMatchConfig)
Return type:: None

Classes

HLAMatchConfig(ard_imgt_version, ...)

Functions

`config_context`(config)	Context manager to temporarily override (thread-)local config.
`get_config`()
`get_config_version`()
`set_config`(config)