Index

A

allele (py_hla_match.hla.HLA attribute) allele_group (py_hla_match.hla.HLA attribute) allele_match() (in module py_hla_match.matching) ALLELE_MISMATCH (py_hla_match.policy.AlleleMatchLevel attribute) (py_hla_match.policy.ExpressionSuffixMatchLevel attribute) allele_pair_match() (in module py_hla_match.matching) allele_string (py_hla_match.hla.HLA attribute) AlleleMatchLevel (class in py_hla_match.policy) alleles (py_hla_match.models.HLAPair property) ambiguous_suffixes (py_hla_match.policy.ExpressionSuffixPolicy attribute) ANTIGEN_MISMATCH (py_hla_match.policy.AlleleMatchLevel attribute) (py_hla_match.policy.ExpressionSuffixMatchLevel attribute)

API_ERROR (py_hla_match.external.DPB1TCEStatus attribute) ard_data_dir (py_hla_match.config.HLAMatchConfig attribute) ard_imgt_version (py_hla_match.config.HLAMatchConfig attribute) ARD_MATCH (py_hla_match.policy.AlleleMatchLevel attribute) (py_hla_match.policy.ExpressionSuffixMatchLevel attribute) ARD_MATCH_ONLY (py_hla_match.policy.MolecularMatchLevel attribute) ard_redux_allele (py_hla_match.hla.HLA attribute) ard_redux_allele_group (py_hla_match.hla.HLA attribute) ard_redux_allele_string (py_hla_match.hla.HLA attribute) ARDMatchLevel (class in py_hla_match.policy) ARDMatchLevelCertainty (class in py_hla_match.policy) ARDMatchRefinementError

C

CERTAIN (py_hla_match.policy.ARDMatchLevelCertainty attribute) (py_hla_match.policy.MolecularMatchLevelCertainty attribute)

CODING_SEQUENCE_MATCH (py_hla_match.policy.MolecularMatchLevel attribute) config_context() (in module py_hla_match.config) CONFIGURATION_ERROR (py_hla_match.external.DPB1TCEStatus attribute)

D

Donor (class in py_hla_match.models) DPB1Result (class in py_hla_match.external) DPB1TCEConfig (class in py_hla_match.external)

DPB1TCEStatus (class in py_hla_match.external) drb345_sub_loci (py_hla_match.config.HLAMatchConfig property) DRB345_SUBLOCUS_MISMATCH (py_hla_match.policy.AlleleMatchLevel attribute) drb_sub_locus (py_hla_match.hla.HLA attribute)

E

effective_valid_loci (py_hla_match.config.HLAMatchConfig property) EmptyHLAStringError endpoints (py_hla_match.external.DPB1TCEConfig attribute) equal_risk (py_hla_match.policy.ExpressionSuffixPolicy attribute)

EXACT_ALLELE_MATCH (py_hla_match.policy.MolecularMatchLevel attribute) expression_suffix_policy (py_hla_match.config.HLAMatchConfig attribute) ExpressionSuffixMatchLevel (class in py_hla_match.policy) ExpressionSuffixPolicy (class in py_hla_match.policy) extra_valid_loci (py_hla_match.config.HLAMatchConfig attribute)

F

FULL_PROTEIN_MATCH (py_hla_match.policy.MolecularMatchLevel attribute)

G

G_GROUP_MATCH (py_hla_match.policy.ARDMatchLevel attribute) get_ard_instance() (in module py_hla_match.singleton) get_config() (in module py_hla_match.config) get_config_version() (in module py_hla_match.config)

get_dpb1_tce_status() (py_hla_match.matching.MatchResult method) get_hla_summary() (py_hla_match.models.Individual method) get_match_level_for_resolution() (py_hla_match.matching.MatchResult method) get_paired_resolution() (py_hla_match.models.HLAPair method) group_code (py_hla_match.hla.HLA attribute)

H

has_resolution_level() (py_hla_match.hla.HLA method) HLA (class in py_hla_match.hla)

HLADataSource (class in py_hla_match.parser) HLAMatchConfig (class in py_hla_match.config) HLAPair (class in py_hla_match.models)

I

IGNORE (py_hla_match.policy.ExpressionSuffixMatchLevel attribute) Individual (class in py_hla_match.models)

INVALID_ALLELES (py_hla_match.external.DPB1TCEStatus attribute) InvalidLocusComparisonError is_valid (py_hla_match.external.DPB1Result property)

L

loci_match_basic_resolution (py_hla_match.matching.MatchResult property)

loci_match_high_resolution (py_hla_match.matching.MatchResult property) locus (py_hla_match.hla.HLA attribute)

M

MalformedHLADataSourceError MalformedHLAStringError MatchResult (class in py_hla_match.matching) module py_hla_match py_hla_match.config py_hla_match.exceptions py_hla_match.export py_hla_match.external py_hla_match.hla py_hla_match.matching py_hla_match.models py_hla_match.parser py_hla_match.policy py_hla_match.singleton

MolecularMatchLevel (class in py_hla_match.policy) MolecularMatchLevelCertainty (class in py_hla_match.policy) multi_locus_match() (in module py_hla_match.matching)

N

na_tokens (py_hla_match.config.HLAMatchConfig attribute) nomenclature_pattern (py_hla_match.config.HLAMatchConfig property) non_coding_variant (py_hla_match.hla.HLA attribute) NOT_APPLICABLE (py_hla_match.policy.ARDMatchLevel attribute) (py_hla_match.policy.ARDMatchLevelCertainty attribute) (py_hla_match.policy.MolecularMatchLevel attribute) (py_hla_match.policy.MolecularMatchLevelCertainty attribute)

NOT_ASSESSABLE (py_hla_match.policy.AlleleMatchLevel attribute) (py_hla_match.policy.ExpressionSuffixMatchLevel attribute) (py_hla_match.policy.MolecularMatchLevel attribute)

P

P_GROUP_MATCH (py_hla_match.policy.ARDMatchLevel attribute) PairwiseMatch (class in py_hla_match.export) parse() (py_hla_match.parser.HLADataSource method) Patient (class in py_hla_match.models) prediction (py_hla_match.external.DPB1Result attribute) py_hla_match module py_hla_match.config module py_hla_match.exceptions module py_hla_match.export module py_hla_match.external module

py_hla_match.hla module py_hla_match.matching module py_hla_match.models module py_hla_match.parser module py_hla_match.policy module py_hla_match.singleton module PyardLibraryError

Q

q_present (py_hla_match.policy.ExpressionSuffixPolicy attribute)

query_dpb1_tce() (in module py_hla_match.external)

R

recompile_patterns() (py_hla_match.config.HLAMatchConfig method) REQUEST_ERROR (py_hla_match.external.DPB1TCEStatus attribute) response_keys (py_hla_match.external.DPB1TCEConfig attribute)

risk_suffixes (py_hla_match.policy.ExpressionSuffixPolicy attribute) risk_vs_different_risk (py_hla_match.policy.ExpressionSuffixPolicy attribute) risk_vs_none (py_hla_match.policy.ExpressionSuffixPolicy attribute) run() (py_hla_match.export.PairwiseMatch method)

S

scan_loci() (in module py_hla_match.export) set_config() (in module py_hla_match.config) status (py_hla_match.external.DPB1Result attribute)

strict_loci (py_hla_match.config.HLAMatchConfig attribute) SUCCESS (py_hla_match.external.DPB1TCEStatus attribute) suffix (py_hla_match.hla.HLA attribute) synonymous_variant (py_hla_match.hla.HLA attribute)

T

TIMEOUT_ERROR (py_hla_match.external.DPB1TCEStatus attribute)

to_df() (py_hla_match.export.PairwiseMatch method)

U

UNCERTAIN (py_hla_match.policy.ARDMatchLevelCertainty attribute) (py_hla_match.policy.MolecularMatchLevelCertainty attribute)

UNEXPECTED_ERROR (py_hla_match.external.DPB1TCEStatus attribute)

V

VALUE_ERROR (py_hla_match.external.DPB1TCEStatus attribute)